Type-illumina

⬝Upload samples ⬝pre-process ⬝Merge samples

⬝ pre- process options

⬝Cutadapter parameter

• R1 adapter:

  -A

  -G

  -B

• Sequence of R1 adapter:

• R2 adapter:

  -A

  -G

  -B

-Sequence of R2 adapter:

⬝Trimmomatic PE Parameter:

-Sliding window size: 30 (?)

-Sliding window quality:20 (?)

-Min len: 40 (?)

⬝Fastq Join Parameter

• percent maximum:8 (?)
• Minimum overlap:10 (?)
• R1 file: choose sample
• R2 file: choose sample

⬝add pair ➔ save